Journal: SpringerPlus

Article Title: Development of a multiplex real-time PCR assay for detection of Mycoplasma pneumoniae , Chlamydia pneumoniae and mutations associated with macrolide resistance in Mycoplasma pneumoniae from respiratory clinical specimens

doi: 10.1186/s40064-015-1457-x

Figure Lengend Snippet: Comparison of the results from multiplex real-time PCR and reference PCRs for detection of (a) M. pneumoniae (MP) and (b) C. pneumoniae (CP) in clinical respiratory specimens

Article Snippet: The analytical sensitivity of the multiplex real-time PCR assay was assessed by amplifying serial dilutions of M. pneumoniae M129 DNA control (ZeptoMetrix Corporation, Franklin, MA) and DNA from C. pneumoniae K-6 (quantitated at Mirja Puolakkainen’s research laboratory).

Techniques: Comparison, Multiplex Assay, Real-time Polymerase Chain Reaction

Journal: SpringerPlus

Article Title: Development of a multiplex real-time PCR assay for detection of Mycoplasma pneumoniae , Chlamydia pneumoniae and mutations associated with macrolide resistance in Mycoplasma pneumoniae from respiratory clinical specimens

doi: 10.1186/s40064-015-1457-x

Figure Lengend Snippet: Melting curve displaying a patient sample containing DNA from M. pneumoniae with macrolide resistance-associated mutation (MR–MP). The melting profile of a patient sample was compared to the melting profiles of 3 controls: (1) Plasmid control 2063C which contains M. pneumoniae 23S rRNA PCR target sequence with base C at the position 2063 (DNA amplicon with base C at the position 2064 displays similar melting profile, data not shown). (2) Plasmid control 2063G which contains M. pneumoniae 23S rRNA target sequence with base G at the position 2063 (DNA amplicon with base G at position the 2064 displays similar melting profile, data not shown). (3) Wt (wild type) M. pneumoniae DNA

Article Snippet: The analytical sensitivity of the multiplex real-time PCR assay was assessed by amplifying serial dilutions of M. pneumoniae M129 DNA control (ZeptoMetrix Corporation, Franklin, MA) and DNA from C. pneumoniae K-6 (quantitated at Mirja Puolakkainen’s research laboratory).

Techniques: Mutagenesis, Plasmid Preparation, Control, Sequencing, Amplification

Journal: SpringerPlus

Article Title: Development of a multiplex real-time PCR assay for detection of Mycoplasma pneumoniae , Chlamydia pneumoniae and mutations associated with macrolide resistance in Mycoplasma pneumoniae from respiratory clinical specimens

doi: 10.1186/s40064-015-1457-x

Figure Lengend Snippet: The results of QCMD 2014 proficiency panel for C. pneumoniae and M. pneumoniae using the developed multiplex PCR method

Article Snippet: The analytical sensitivity of the multiplex real-time PCR assay was assessed by amplifying serial dilutions of M. pneumoniae M129 DNA control (ZeptoMetrix Corporation, Franklin, MA) and DNA from C. pneumoniae K-6 (quantitated at Mirja Puolakkainen’s research laboratory).

Techniques: Multiplex Assay, Multiplex PCR

Journal: SpringerPlus

Article Title: Development of a multiplex real-time PCR assay for detection of Mycoplasma pneumoniae , Chlamydia pneumoniae and mutations associated with macrolide resistance in Mycoplasma pneumoniae from respiratory clinical specimens

doi: 10.1186/s40064-015-1457-x

Figure Lengend Snippet: Primer and probe sequences for amplification of C. pneumoniae, M. pneumoniae, macrolide resistance associated mutations in M. pneumoniae and human beta-globin DNA, as well as the primer sequences used for sequencing of M. pneumoniae 23S rRNA

Article Snippet: The analytical sensitivity of the multiplex real-time PCR assay was assessed by amplifying serial dilutions of M. pneumoniae M129 DNA control (ZeptoMetrix Corporation, Franklin, MA) and DNA from C. pneumoniae K-6 (quantitated at Mirja Puolakkainen’s research laboratory).

Techniques: Amplification, Sequencing, Diagnostic Assay

Journal: BMC Infectious Diseases

Article Title: Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection

doi: 10.1186/s12879-019-4750-4

Figure Lengend Snippet: Specificity of the RAA assay for M. pneumoniae detection. Only the M. pneumoniae samples produced amplification signals, whereas the negative control (buffer only) and control bacterial samples produced negative amplification signals

Article Snippet: The M. pneumoniae Reference Strain M129 (ATCC 29342) sequence was downloaded from the GenBank database ( https://www.ncbi.nlm.nih.gov/pubmed ).

Techniques: Produced, Amplification, Negative Control, Control

Journal: BMC Infectious Diseases

Article Title: Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection

doi: 10.1186/s12879-019-4750-4

Figure Lengend Snippet: Sensitivity of the RAA assay for M. pneumoniae detection. A serial dilution of the recombinant plasmid was used ranging from 10 4 to 10 0 copies/reaction. A negative control (buffer only) was also assayed

Article Snippet: The M. pneumoniae Reference Strain M129 (ATCC 29342) sequence was downloaded from the GenBank database ( https://www.ncbi.nlm.nih.gov/pubmed ).

Techniques: Serial Dilution, Recombinant, Plasmid Preparation, Negative Control

Journal: BMC Infectious Diseases

Article Title: Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection

doi: 10.1186/s12879-019-4750-4

Figure Lengend Snippet: The clinical performance of RAA for the detection of respiratory specimens of M. pneumoniae compared with real-time PCR as the reference method

Article Snippet: The M. pneumoniae Reference Strain M129 (ATCC 29342) sequence was downloaded from the GenBank database ( https://www.ncbi.nlm.nih.gov/pubmed ).

Techniques: Real-time Polymerase Chain Reaction

Journal:

Article Title: Detection of Macrolide Resistance in Mycoplasma pneumoniae by Real-Time PCR and High-Resolution Melt Analysis ▿

doi: 10.1128/AAC.00582-08

Figure Lengend Snippet: Macrolide-resistant clinical isolates and MIC data

Article Snippet: Reference strains M129 (ATCC 29342D) and FH (ATCC 15531) were tested along with 100 clinical isolates submitted to or isolated within the Respiratory Disease Branch of the CDC for testing between 1991 and 2008.

Techniques: Isolation, Mutagenesis

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: Schematic representation of M. pneumoniae M129 P1 gene and its four gene fragments; P1-I, P1-II, P1-III and P1-IV. Each bar represents the position of UGA codons that codes for tryptophan. To express these fragments, UGA codons were modified to UGG. Fragments were amplified using a set of forward (F) and reverse primers (R).

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Modification, Amplification

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: SDS-PAGE and Western blot analysis of recombinant M. pneumoniae P1 proteins fragments. (A) Coomassie blue stained SDS-PAGE analysis of rP1-I, rP1-II, rP1-III and rP1-IV in E. coli extract. The fragments were expressed in pET28b vector and protein production was induced with IPTG in E. coli. (B) Western blot analysis of induced and uninduced P1 protein fragments rP1-I, rP1-II, rP1-IV (i) and rP1-III (ii), showing reactivity with anti-6X His antibody. (C) Coomassie blue stained SDS-PAGE analysis of Ni 2+ -NTA purified P1 protein fragments; rP1-I, rP1-II, rP1-III and rP1-IV. (D) Western blot analysis of purified P1 protein fragments rP1-I, rP1-II, rP1-III and rP1-IV showing reactivity with anti-6X His antibody. Lane Marker: Molecular mass marker (kDa); Arrows indicate position of expressed protein.

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: SDS Page, Western Blot, Recombinant, Staining, Plasmid Preparation, Purification, Marker

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: Western blot and ELISA analysis of M. pneumoniae lysate and Cross reactivity of Pab (rP1-I) and Pab (rP1-IV). Reactivity of P1 (170 kDa) with anti-P1 protein fragments antibody Pab (rP1-I), Pab (rP1-II), Pab (rP1-III) & Pab (rP1-IV) rose in Rabbit by western blotting (A) and by ELISA (B) . (C) & (D) Immuno blot analysis of rP1-I, rP1-II, rP1-III and rP1-IV fragments with Pab (rP1-I) and Pab (rP1-IV) showing their cross reactivity with respective sera. Lane Marker: Molecular mass marker (kDa).

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Western Blot, Enzyme-linked Immunosorbent Assay, Marker

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: Recombinant P1 protein fragments are recognized by anti- M. pneumoniae antibody and by sera of M. pneumoniae infected patients. (A) (I) Coomassie blue stained SDS-PAGE analysis of purified M. pneumoniae P1 protein fragments; rP1-I, rP1-II, rP1-III and rP1-IV. Immuno blot analysis of purified P1 protein fragments; rP1-I, rP1-II, rP1-III and rP1-IV using anti- M. pneumoniae antibody (II) and using pooled sera of M. pneumoniae infected patients (III). (B) Immuno blot analysis of purified M. pneumoniae P1 protein fragments rP1-I, rP1-II, rP1-III and rP1-IV with several sera of M. pneumoniae infected patients. PM: Prestained protein marker; PC: positive control; NC: Negative control; Numbers over the blot indicate serial number of sera of M. pneumoniae infected patients tested for these experiments.

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Recombinant, Infection, Staining, SDS Page, Purification, Marker, Positive Control, Negative Control

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: Comparative ELISA analysis of recombinant P1 protein fragments with sera of M. pneumoniae infected patients. Reactivity of purified M. pneumoniae P1 proteins fragments with 25 sera of M. pneumoniae infected patients by ELISA (A) , with 16 healthy patient sera (B) and average values of both A & B (C) . Number on top of column indicates serial number of sera of M. pneumoniae infected patients tested for these experiments.

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Enzyme-linked Immunosorbent Assay, Recombinant, Infection, Purification

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: IFM adhesion assay of M. pneumoniae (A-E). The M. pneumoniae attached to the HEp-2 cells were detected by either anti- M. pneumoniae antibody or antibodies rose in rabbits. The detecting antibodies were added after fixation with methanol. (A) anti- M. pneumoniae antibody (positive control), (B) Pab (rP1-I), (C) Pab (rP1-II), (D) Pab (rP1-III), (E) Pab (rP1-IV). IFM surface exposure assay of M. pneumoniae (F-J) . In this assay the detecting antibodies were added before the methanol fixation. (F) anti- M. pneumoniae antibody (positive control), (G) Pab (rP1-I), (H) Pab (rP1-II), (I) Pab (rP1-III), (J) Pab (rP1-IV). Negative controls: (K) mycoplasmas alone (Without Pabs), (L) Pabs alone (Without mycoplasmas). Bar, 2 μm.

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Cell Adhesion Assay, Positive Control

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: IFM adhesion inhibition assay. M. pneumoniae were pre-incubated with either anti- M. pneumoniae antibodies or antibodies rose in rabbits in different dilutions (1:50, 1:100, 1:200, 1:500) before infection of the HEp-2 cells. These antibodies were: (A-D) anti- M. pneumoniae antibody (positive control), (E-H) Pab (rP1-I), (I-L) Pab (rP1-IV), (M) Pab (rP1-II) (N) Pab (rP1-III) (O) Without antibody, (P) pre-immune serum. Bar, 2 μm.

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Inhibition, Incubation, Infection, Positive Control

Journal: BMC Microbiology

Article Title: Delineation of immunodominant and cytadherence segment(s) of Mycoplasma pneumoniae P1 gene

doi: 10.1186/1471-2180-14-108

Figure Lengend Snippet: Primer sequence used to amplify all four fragments of M. pneumoniae M129 P1 gene

Article Snippet: Entire M. pneumoniae M129 P1 gene was synthesized in four fragments; N-terminal P1-I (1069 bp), two middle fragments P1-II (1043 bp) and P1-III (1983 bp), and C-terminal P1-IV (1167 bp) fragments by codon optimization replacing 21 UGA to UGG codons (Entelechon GmbH, Germany).

Techniques: Sequencing

Journal: iScience

Article Title: A tetracationic porphyrin with dual anti-prion activity

doi: 10.1016/j.isci.2023.107480

Figure Lengend Snippet:

Article Snippet: pET-41 huPrP90-231 (M129) , Provided by B. Caughey, Rocky Mountain Laboratories, Hamilton, MT, USA , N/A.

Techniques: Western Blot, Virus, Recombinant, Saline, Reverse Transcription, Bicinchoninic Acid Protein Assay, Generated, Software, Imaging